About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105385078_105387093_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105385078 - 105387093
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CCTTTTCTATTT
Flanking Amino Acid:
MRNQMGNLLKV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
46.5
-0.1
1.9
62.98
42.5

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018909
105364329 - 105387098
22770