Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105385346_105401598_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

105385346 - 105401598

Intron Length:

16253

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGACAT

5'SS Class:

strong_major

3'SS Sequence:

TTGCATTTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

ACATATATAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

80.7

33.7

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

69.2

0.43

63.1

42.6

Minor 5ss

33.6

-1.9

3.2

47.4

Minor BPS

51.5

0.12

1.8

69.27

41.3

Associated Gene:

Gene:

FAM49A

Ensembl Gene ID:

ENSAPLG00000009498

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009959

105364329 - 105403540

39212