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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105401668_105403489_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
105401668 - 105403489
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
GTAATCTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
79.4
0.66
1
76.3
37.8
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
64.4
0.53
1.4
75.86
39.9

Associated Gene:

Gene:
FAM49A
Ensembl Gene ID:
ENSAPLG00000009498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009959
105364329 - 105403540
39212