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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105440396_105442276_R

Intron Information:

Intron Rank:
135763
Intron Class:
major
Intron Phase:
Intron Coordinates:
105440396 - 105442276
Intron Length:
1881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
GCCCTATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCTGCCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
68.3
0.41
0.8
62
33.7
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
53.1
0.18
2.1
76.35
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020431
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018273
105440173 - 105445412
5240