Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105440396_105449909_R

Intron Information:

Intron Rank:

135766

Intron Class:

major

Intron Phase:

Intron Coordinates:

105440396 - 105449909

Intron Length:

9514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GCCCTATCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

TCTGCCCTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

30.2

Major BPS

68.9

0.47

59.6

38.6

Major PPT

68.3

0.41

0.8

33.7

Minor 5ss

41.4

-1

2.9

49.9

46.4

Minor BPS

53.1

0.18

2.1

76.35

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020431

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036854

105440173 - 105449912

9740