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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10545723_10549727_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10545723 - 10549727
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTATACTATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTCTCCAACC
Flanking Amino Acid:
SSSSSTTTIPGVDPELYELT
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.9
43.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
65.6
0.35
1.1
70.3
39.3
Minor 5ss
34.2
-1.8
2.7
40.9
44.9
Minor BPS
55.7
0.16
1.9
71.31
40

Associated Gene:

Gene:
AFTPH
Ensembl Gene ID:
ENSAPLG00000009640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041774
10531851 - 10574111
42261
ENSAPLT00000019796
10538883 - 10574111
35229
ENSAPLT00000010054
10538650 - 10574111
35462