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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10545723_10551523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10545723 - 10551523
Intron Length:
5801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTCTC
5'SS Class:
major
3'SS Sequence:
TTTATACTATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTCTCCAACC
Flanking Amino Acid:
SSSGLTNPLDGVDPELYELT
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69
41.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
65.6
0.35
1.1
70.3
39.3
Minor 5ss
37.9
-1.4
3.2
49.8
41
Minor BPS
55.7
0.16
1.9
71.31
40

Associated Gene:

Gene:
AFTPH
Ensembl Gene ID:
ENSAPLG00000009640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043917
10538650 - 10574111
35462