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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10549812_10551523_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10549812 - 10551523
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTCTC
5'SS Class:
major
3'SS Sequence:
ACTGAATTTCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
GGTCACTGAATT
Flanking Amino Acid:
SSSGLTNPLDASGGSTLLNL
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69
41.9
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
58.5
0.19
1.2
53.5
44.5
Minor 5ss
37.9
-1.4
3.2
49.8
41
Minor BPS
52.9
0.17
1.7
69.73
40.4

Associated Gene:

Gene:
AFTPH
Ensembl Gene ID:
ENSAPLG00000009640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041774
10531851 - 10574111
42261
ENSAPLT00000019796
10538883 - 10574111
35229
ENSAPLT00000010054
10538650 - 10574111
35462