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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10551585_10558161_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10551585 - 10558161
Intron Length:
6577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GACTTTTCAACT
Flanking Amino Acid:
MNTCTSDQFQESLPPVQFDW
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.5
0.6
0.8
68.4
37.5
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
57.7
0.32
1.5
69.57
41.5

Associated Gene:

Gene:
AFTPH
Ensembl Gene ID:
ENSAPLG00000009640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043917
10538650 - 10574111
35462
ENSAPLT00000041774
10531851 - 10574111
42261
ENSAPLT00000019796
10538883 - 10574111
35229
ENSAPLT00000010054
10538650 - 10574111
35462