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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105523810_105565809_F

Intron Information:

Intron Rank:
129848
Intron Class:
major
Intron Phase:
Intron Coordinates:
105523810 - 105565809
Intron Length:
42000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGGAAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.8
0.74
0.8
81.3
36.3
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
46.8
-0.2
1.8
53.94
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019886
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036856
105523558 - 105566991
43434