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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105550689_105562415_R

Intron Information:

Intron Rank:
132905
Intron Class:
major
Intron Phase:
Intron Coordinates:
105550689 - 105562415
Intron Length:
11727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAAAAAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
86
0.81
0.8
80.4
31.6
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
43.3
-0.5
1.9
54.23
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018730
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029128
105550027 - 105570854
20828