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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10560616_10560941_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10560616 - 10560941
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
GTTGTTTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
AACCTCTTAAGT
Flanking Amino Acid:
CSLGIDTRNILFTGNKKQPV
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.5
42.3
Major BPS
69.9
0.49
1
61.3
37
Major PPT
78.8
0.65
1
78
40.1
Minor 5ss
35
-1.7
3.1
47.2
42.5
Minor BPS
56.9
0.3
1.7
68.52
42.2

Associated Gene:

Gene:
AFTPH
Ensembl Gene ID:
ENSAPLG00000009640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043917
10538650 - 10574111
35462
ENSAPLT00000041774
10531851 - 10574111
42261
ENSAPLT00000019796
10538883 - 10574111
35229
ENSAPLT00000010054
10538650 - 10574111
35462