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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105810534_105814382_F

Intron Information:

Intron Rank:
132858
Intron Class:
major
Intron Phase:
Intron Coordinates:
105810534 - 105814382
Intron Length:
3849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TCCTACACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTCTCCTACACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.1
34
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.5
0.53
0.9
66.5
33.9
Minor 5ss
36.5
-1.5
2.9
44.7
43.5
Minor BPS
55.8
0.26
2.1
76.24
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035473
105810485 - 105825056
14572