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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105837587_105841746_F

Intron Information:

Intron Rank:
130056
Intron Class:
major
Intron Phase:
Intron Coordinates:
105837587 - 105841746
Intron Length:
4160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGGC
5'SS Class:
major
3'SS Sequence:
TTGAACTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
AACTCTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
63.2
41.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.8
0.58
1
66
44.8
Minor 5ss
44.7
-0.6
3
61.6
43.3
Minor BPS
66.5
0.6
1.4
76.52
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044623
105836867 - 105842028
5162