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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105859161_105861704_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105859161 - 105861704
Intron Length:
2544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
EQNYNLQKEGGYFLSREVAR
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
84.9
28.8
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025611
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043490
105858178 - 105867693
9516