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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105861792_105863692_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105861792 - 105863692
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAAGAAT
5'SS Class:
major
3'SS Sequence:
TACTTTGATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTACTTTAATG
Flanking Amino Acid:
PKEYCISRLLTYKMPYTWDP
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1
70.8
34.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.5
0.57
1
73.6
40.7
Minor 5ss
29.6
-2.3
3.3
39.1
40.8
Minor BPS
68.7
0.45
1.4
67.54
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025611
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043490
105858178 - 105867693
9516