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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105927600_105975843_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105927600 - 105975843
Intron Length:
48244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
LEEFQQLYVKFFPYGDASKF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
VSNL1
Ensembl Gene ID:
ENSAPLG00000010558
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010986
105927433 - 105977366
49934