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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105976060_105976959_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105976060 - 105976959
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTCTTCCCAAAG
Flanking Amino Acid:
TRVEMLEIIEAIYKMVGTVI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
73.6
0.53
1
75.1
27.5
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
46.7
-0.3
2
57.32
43.9

Associated Gene:

Gene:
VSNL1
Ensembl Gene ID:
ENSAPLG00000010558
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010986
105927433 - 105977366
49934