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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105981884_105983114_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105981884 - 105983114
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CACTATTTAAAT
Flanking Amino Acid:
QFILLTPQSMSSLPTSSHIR
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.3
0.68
0.8
78.2
34.6
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
54.5
0.22
1.7
67.09
43.5

Associated Gene:

Gene:
SMC6
Ensembl Gene ID:
ENSAPLG00000008910
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009309
105981766 - 106014028
32263