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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105989376_105990136_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105989376 - 105990136
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
AACATTACCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGAATTTCAAAC
Flanking Amino Acid:
LLAAKEKELEEKTAQARQIY
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
58.8
0.2
0.9
52.1
36.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
46.9
-0.2
1.6
54.2
36.9

Associated Gene:

Gene:
SMC6
Ensembl Gene ID:
ENSAPLG00000008910
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009309
105981766 - 106014028
32263
ENSAPLT00000027081
105980642 - 106012172
31531