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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_105996519_105998173_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105996519 - 105998173
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGCTCCTAAAGC
Flanking Amino Acid:
HFKRKPVGPLGAFIHPKDAE
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
80
0.68
0.9
76.5
37.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
51
0.01
2
61.1
44.2

Associated Gene:

Gene:
SMC6
Ensembl Gene ID:
ENSAPLG00000008910
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027081
105980642 - 106012172
31531
ENSAPLT00000009309
105981766 - 106014028
32263