Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106002160_106002251_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106002160 - 106002251

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TGCTAATATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TATGTGCTAATA

Flanking Amino Acid:

ELKHKMAWAVVGEMEREIQP

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

77.6

31.4

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

66.2

0.36

63.3

Minor 5ss

41.6

-0.9

2.7

39.8

Minor BPS

44.6

-0.4

2.3

60.32

40.2

Associated Gene:

Gene:

SMC6

Ensembl Gene ID:

ENSAPLG00000008910

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009309

105981766 - 106014028

32263

ENSAPLT00000027081

105980642 - 106012172

31531