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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106005932_106008314_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106005932 - 106008314
Intron Length:
2383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATGCTTTTATT
Flanking Amino Acid:
NLNFVVGNNGSGKSSVLTAL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.9
0.74
0.9
76.7
36.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
54.8
0.23
1.7
70.85
40.9

Associated Gene:

Gene:
SMC6
Ensembl Gene ID:
ENSAPLG00000008910
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027081
105980642 - 106012172
31531
ENSAPLT00000009309
105981766 - 106014028
32263