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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106012173_106013851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
106012173 - 106013851
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAGCATTTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
71.7
36.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.3
0.77
0.7
80.4
24.9
Minor 5ss
30.6
-2.2
3.2
36.8
47.7
Minor BPS
50.1
0.08
1.8
67.47
43.1

Associated Gene:

Gene:
SMC6
Ensembl Gene ID:
ENSAPLG00000008910
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009309
105981766 - 106014028
32263