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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106016394_106017171_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
106016394 - 106017171
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTATTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATGTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.8
0.69
0.9
81.4
36.1
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
61
0.34
1.8
73.34
38.4

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910