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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106017379_106019107_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106017379 - 106019107
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTACTTTATTG
Flanking Amino Acid:
MIGVVTKPHLRNLFFRFSFL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.9
0.74
0.8
77.7
35
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
56.2
0.05
1.7
62.2
40.3

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910