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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106019295_106020124_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106019295 - 106020124
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTTTTGTATT
Flanking Amino Acid:
RSHFKSVLKECLELLECLGV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.2
0.77
0.8
81.3
36.2
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
49.7
0.06
1.7
71.39
40.7

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910