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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106025746_106025861_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106025746 - 106025861
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAGTG
5'SS Class:
major
3'SS Sequence:
GTTTTACCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTTTACCC
Flanking Amino Acid:
QANAVEDNIRKKANSCEGFP
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.6
41.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.8
0.6
0.9
70.8
35
Minor 5ss
34.4
-1.8
3.7
46.6
43.4
Minor BPS
60.4
0.31
1.7
72.92
38.9

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910