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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106026080_106027316_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106026080 - 106027316
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAC
5'SS Class:
major
3'SS Sequence:
TTTACACTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACACTAACA
Flanking Amino Acid:
CKRPNLLSFQVFASEKMEWA
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
74.9
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
1
67.1
38.1
Minor 5ss
34.3
-1.8
3
44.9
43.1
Minor BPS
59.7
0.3
2
78.77
36.8

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910