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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106027448_106028880_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106027448 - 106028880
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTGGA
5'SS Class:
major
3'SS Sequence:
TCTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAATCATTTATT
Flanking Amino Acid:
YISSKQLQAIRIVKTRVKNG
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
63.7
42.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.8
0.81
0.8
79.9
32.3
Minor 5ss
38.1
-1.3
3.2
49.4
46.9
Minor BPS
56.1
0.27
1.9
75.44
41

Associated Gene:

Gene:
GEN1
Ensembl Gene ID:
ENSAPLG00000008596
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008949
106015969 - 106031878
15910