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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106056010_106056270_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106056010 - 106056270
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATATTTTTACCT
Flanking Amino Acid:
IEGTTQLQKQLYFHCSVVIC
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.3
0.75
0.7
78.3
30.1
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
63.9
0.51
1.6
78.4
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173