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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106057038_106057791_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106057038 - 106057791
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TTTGCCATCAAT
Flanking Amino Acid:
SLDLSLKLFKDESYSDLYQE
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
49.2
0.02
2.2
78.17
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173