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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106057920_106057996_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106057920 - 106057996
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTTCTAAAAT
Flanking Amino Acid:
FRPGNDSPVYKLKFVCLYTI
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.8
0.65
0.7
76.6
25.5
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
59.2
0.37
1.8
76.13
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173