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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106060932_106061348_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106060932 - 106061348
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TAATCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTCATTTAACC
Flanking Amino Acid:
PFLSSLLDYEEIHTSGVLAS
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.9
0.49
0.9
63.3
38.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
65.1
0.45
1.5
72.69
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173