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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106062137_106062211_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106062137 - 106062211
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGGATATTGATG
Flanking Amino Acid:
FELVELTVTNNSNLSARIMN
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
44.2
-0.6
1.6
42.56
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173
ENSAPLT00000046981
106054441 - 106068334
13894