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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106063663_106063730_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106063663 - 106063730
Intron Length:
68

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TAGGTCTAAACA
Flanking Amino Acid:
YNTAQTQLVKAQGITFSAVR
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
72.7
38.3
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
31
-2.2
2.7
35.2
40.7
Minor BPS
53.9
0.12
1.8
63.5
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173