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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106065361_106065845_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106065361 - 106065845
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
ATCTGTCTAACA
Flanking Amino Acid:
SALSCHSRLEKDTFTVTIQV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
69.8
0.45
1
62.8
38.4
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
49.7
-0
2.1
65.95
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173