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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106065974_106067282_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106065974 - 106067282
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CCAATCTTAACT
Flanking Amino Acid:
EDKYLSFSAVDQSGIAWELD
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.8
0.58
0.8
70.3
35.9
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
66.4
0.59
1.4
72.89
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894
ENSAPLT00000008442
106055162 - 106068334
13173