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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106067900_106068130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106067900 - 106068130
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTACTGTTAATC
Flanking Amino Acid:
MELGLVLRFLVTGIFIS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
81.2
29.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
54.4
0.12
2
68.1
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008442
106055162 - 106068334
13173
ENSAPLT00000046981
106054441 - 106068334
13894
ENSAPLT00000022409
106054441 - 106068334
13894