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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106104697_106105375_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
106104697 - 106105375
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTGCTCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.67
0.8
78.2
35.7
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
51.4
0.04
1.7
62.94
37.6

Associated Gene:

Gene:
KCNS3
Ensembl Gene ID:
ENSAPLG00000001833
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001826
106084632 - 106114400
29769