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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106184797_106200520_R

Intron Information:

Intron Rank:
130521
Intron Class:
major
Intron Phase:
Intron Coordinates:
106184797 - 106200520
Intron Length:
15724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTTCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
48.8
-0
1.9
67.78
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040026
106180100 - 106201061
20962