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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106342810_106342976_R

Intron Information:

Intron Rank:
136549
Intron Class:
major
Intron Phase:
Intron Coordinates:
106342810 - 106342976
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.5
0.62
1
73.3
37
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020907
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041863
106341603 - 106343177
1575