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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10638858_10639826_F

Intron Information:

Intron Rank:
124114
Intron Class:
major
Intron Phase:
Intron Coordinates:
10638858 - 10639826
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTTCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.9
0.63
0.8
73.7
29.9
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
77.6
0.86
1.5
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021371
10638582 - 10642498
3917