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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106410239_106413457_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106410239 - 106413457
Intron Length:
3219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TTCCTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTCCTATTT
Flanking Amino Acid:
VRDFCRQVLQEEPRLDVLIN
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74
0.54
1
74.6
33
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
53.9
0.2
1.9
75.75
41.6

Associated Gene:

Gene:
RDH14
Ensembl Gene ID:
ENSAPLG00000008116
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008422
106409621 - 106413820
4200