Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106419900_106420916_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

106419900 - 106420916

Intron Length:

1017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTACT

5'SS Class:

major

3'SS Sequence:

ATTTTGTACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TATTTTGTACTC

Flanking Amino Acid:

QLNENKPLAQGPLKGFLEDL

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

78.3

35.6

Major BPS

88.7

0.96

0.8

36.5

Major PPT

75.9

0.58

74.1

40.1

Minor 5ss

40.8

-1

2.4

53.1

43.6

Minor BPS

46.7

-0.2

2.1

62.03

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008311

106419561 - 106425982

6422