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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106422451_106425242_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106422451 - 106425242
Intron Length:
2792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCCGG
5'SS Class:
major
3'SS Sequence:
TTCTAACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTCTATTGACT
Flanking Amino Acid:
KPGPAFHFVKALEHVNARLL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
54.7
49.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.5
0.62
0.9
70.7
34.7
Minor 5ss
36.2
-1.6
3.2
47.8
47.7
Minor BPS
60.3
0.41
1.6
78.62
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008311
106419561 - 106425982
6422