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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10642392_10644099_F

Intron Information:

Intron Rank:
124117
Intron Class:
major
Intron Phase:
Intron Coordinates:
10642392 - 10644099
Intron Length:
1708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TAATCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTCTAATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.8
0.58
1
69.5
41
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
59.4
0.37
1.9
80.51
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044129
10641926 - 10647103
5178
ENSAPLT00000021993
10642275 - 10650682
8408
ENSAPLT00000047273
10639827 - 10649186
9360