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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10649062_10650560_F

Intron Information:

Intron Rank:
124123
Intron Class:
major
Intron Phase:
Intron Coordinates:
10649062 - 10650560
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCTCTGCTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
42.4
-0.7
2.3
48.51
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021993
10642275 - 10650682
8408