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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106590888_106594096_F

Intron Information:

Intron Rank:
142651
Intron Class:
major
Intron Phase:
Intron Coordinates:
106590888 - 106594096
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTGCTCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
74.9
0.56
1
75.1
33.8
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
63.6
0.29
1.5
65.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026887
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037537
106590886 - 106620735
29850