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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106594190_106619611_F

Intron Information:

Intron Rank:
142652
Intron Class:
major
Intron Phase:
Intron Coordinates:
106594190 - 106619611
Intron Length:
25422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TAACTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTGCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.6
0.46
1
61.5
44
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
78.2
0.96
1.3
88.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026887
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037537
106590886 - 106620735
29850